Computational Life Sciences

Overzicht Proefschriften CLS projecten

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Proefschrift Ashyraliyev 

Project: Simulation of developmental regulatory networks

Promovendus: Maksat Ashyraliyev

Titel: Modelling, Simulation, and Inferring Regulatory Networks

Promotor: Prof.dr. J.G. Verwer

Proefschrift Brijder  

Project: Computational Views on Membranes and Ciliates (VIEWS)

Promovendus: Robert Brijder

Titel: Gene Assembly and Membrane Systems

Promotor: Prof. dr. G. Rozenberg

Co-promotor: Dr. H.J. Hoogeboom 

Proefschrift Bruggeman 

Project: Understanding the Organic Carbon Pump in meso-scale ocean flows

Promovendus: Jorn Bruggeman

Titel: Succenssion in Plankton Communities, a Trait-Based Perspective

Promotor: Prof.dr. S.A.L.M. Kooijman

Co-promotor: Dr.ir. B.W. Kooi

Proefschrift Cordero  

Project: Metabolism, gene regulation and evolution: mutual interaction across time-scales.

Promovendus: Otto X. Cordero

Titel: Macroevolutionary Patterns in Microbial Genomes and Regulomes

Promotor: Prof.dr. P. Hogeweg 

Proefschrift Crombach   

Project: Metabolism, gene regulation and evolution: mutual interaction across time-scales.

Promovendus: Anton Crombach

Titel: Evolving the Structure of Genomes, Networks and Ecosystems

Promotor: Prof.dr. P. Hogeweg

 
Proefschrift Yves Fomekong - Nanfack 

Project: Simulation of developmental regulatory networks

Promovendus: Yves Fomekong - Nanfack

Titel: Genetic Regulatory Networks Inference. Modeling, Parameters Estimation & Model Validation

Promotor: Prof.dr. P.M.A. Sloot

Co-promotor: Dr. J.A. Kaandorp

Proefschrift Hanna Härdin 

Project: Mathematics and Computation for the System Biology of Cells

Promovendus: Hanna Härdin

Titel: Handling biological complexity: as simple as possible but not simpler

Promotor:en: Prof.dr. H.V. Westerhoff
                    Prof.dr.ir. J.H. van Schuppen 

Co-promotoren: Dr. K. Krab
                        Dr. A. Zagaris

Proefschrift Muskulus 

Project: Computational Views on Membranes and Ciliates (VIEWS)

Promovendus: Michael Muskulus

Titel: Distance-Based Analysis of Dynamical Systems and Time Series by Optimal Transport

Promotor: Prof.dr. S.M. Verduyn Lunel

Proefschrift Omta 

Project: Understanding the Organic Carbon Pump in meso-scale ocean flows

Promovendus: Anne Willem Omta

Titel: Eddies and Algal Stoichiometry: Physical and Biological Impacts on the Organic Carbon Pump

Promotor: Prof.dr. S.A.L.M. Kooijman

Co-promotor: Prof.dr.ir. H.A. Dijkstra

Proefschrift Revilla 

Project: The emergence of biocomplexity: a steady state between physical and biotic evolution?

Promovendus: Tomás Revilla

Titel: Multispecies Resource Competition

Promotor: Prof.dr. F.J. Weissing

Proefschrift Tindemans 

Project: Evolutionary approach to modelling the plant cytoskeleton

Promovendus: Simon Tindemans

Titel: Biomolecular Design Elements. Cortical Microtubules and DNA-coated Colloids

Promotor: Prof.dr. B.M. Mulder

Proefschrift Rodriguez  

Project: Mathematics and Computation for the System Biology of Cells

Promovendus: Jordi Vidal Rodriguez

Titel: Stochasticity in Signal Transduction Pathways

Promotor: Prof.dr. P.M.A. Sloot

Co-promotor: Dr. J.A. Kaandorp

Proefschrift Voorn  

Project: Numerical bifurcation analysis of community models including the  study of global bifurcations

Promovendus: George van Voorn

Titel: Ecological Implications of Global Bifurcations

Promotor: Prof.dr. S.A.L.M. Kooijman 

Co-Promotoren: Dr.ir. B.W. Kooi
                        Dr. Yu.A. Kuznetsov

Proefschrift Vreeken 

Project: Mining factors of Celiac

Promovendus: Jilles Vreeken

Titel: Making Pettern Mining Useful

Promotor: Prof.dr. A.P.J.M. Siebes

Proefschrift Wolf  

Project: Amyloidogenesis: a computer simulation study

Promovendus: Maarten Wolf

Titel: Understanding Amyloidogenesis through Computer Simulations 

Promotor: Prof.dr. S.W. de Leeuw
               Prof.dr. J.D. Laman

Co-promotor: Dr. J.A. Jongejan